Application | Comment | Organism |
---|---|---|
biotechnology | five SvLAC genes (SvLAC9, SvLAC13, SvLAC15, SvLAC50, and SvLAC52) fulfill the criteria established to identify lignin-related candidates. They are strong candidates to be involved in lignin polymerization in Setaria viridis and might be good targets for lignin bioengineering strategies | Setaria viridis |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
copper | copper-containing enzyme | Setaria viridis |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Setaria viridis | - |
- |
- |
Posttranslational Modification | Comment | Organism |
---|---|---|
glycoprotein | - |
Setaria viridis |
Source Tissue | Comment | Organism | Textmining |
---|---|---|---|
phloem parenchyma cell | SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles | Setaria viridis | - |
sclerenchyma | SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles. SvLAC50 is exclusively detected in sclerenchymatic fibers surrounding the vascular bundle | Setaria viridis | - |
Synonyms | Comment | Organism |
---|---|---|
SvLAC13 | - |
Setaria viridis |
SvLAC15 | - |
Setaria viridis |
SvLAC50 | - |
Setaria viridis |
SvLAC52 | - |
Setaria viridis |
SvLAC9 | - |
Setaria viridis |
General Information | Comment | Organism |
---|---|---|
additional information | a total of 52 genes encoding laccases (SvLAC1 to SvLAC52) are found in the genome of Setaria viridis, and phylogenetic analyses show that these genes are heterogeneously distributed among the characteristic six subclades of the family and are under relaxed selective constraints. Five SvLAC genes (SvLAC9, SvLAC13, SvLAC15, SvLAC50, and SvLAC52) fulfill the criteria established to identify lignin-related candidates: (1) phylogenetic proximity to previously characterized lignin-related laccases from other species, (2) similar expression pattern to that observed for lignin biosynthetic genes in the Setaria viridis elongating internode, and (3) high expression in Setaria viridis tissues undergoing active lignification | Setaria viridis |